PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G230000.5.p
Common NamePRUPE_ppa009578mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 287aa    MW: 32287.6 Da    PI: 9.4479
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G230000.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.20.000161752141155
                         HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         rR +++ +++  L++l+ +      +K + a++L++A  YI  Lq
  Prupe.2G230000.5.p 175 RRSQKLSDKITVLQKLVSPY-----GKTDTASVLQEASIYIMLLQ 214
                         7999**************99.....9***************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.487164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-5175219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.36E-4175218No hitNo description
SuperFamilySSF474591.57E-8175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MRNALLPSVP FHLYNFGNNI EVQMSNWDAQ VNMNRRLGFY MGSKAFESDN QNSRAGDDFS  60
LPLPLPLQSS SLLAYQPAYP SGAFRYHDGV SQQPVLLDKK ISAPQFEADF QAIQNARKRP  120
IEVDDLGGLV GDKTALNEWN QNKRSKVTNS QQQWHQQFQE TSMQQQNNKL HAPVRRSQKL  180
SDKITVLQKL VSPYGKTDTA SVLQEASIYI MLLQEQIQQN LLRMFSSSYK NAAVLHTQEC  240
GSRQVLDLRS KGLCLVPVSV TQKVTMEEGV DHAATSRKIV IANNLY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.61410.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007218775.10.0hypothetical protein PRUPE_ppa009578mg
TrEMBLM5X2390.0M5X239_PRUPE; Uncharacterized protein
STRINGPOPTR_0008s05200.12e-52(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21340.14e-20bHLH family protein